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Araştırmacılar

Autapse-induced multiple coherence resonance in single neurons and neuronal networks
Activation kinetics of T-type calcium channel by a path probability approximation
Impact of synaptic noise and conductance state on spontaneous cortical firing
Enhancement of pacemaker induced stochastic resonance by an autapse in a scale-free neuronal network
Enhancement of temporal coherence via time-periodic coupling strength in a scale-free network of stochastic Hodgkin-Huxley neurons
Estimation of the propagation of flexural waves in thin plates using a single low-cost sensor
Nonlinear acoustic echo cancellation using an adaptive Hammerstein block structure based on a generalized basis function
Performance of small-world feedforward neural networks for the diagnosis of diabetes
Detection of directional eye movements based on the electrooculogram signals through an artificial neural network
Impact of small-world network topology on the conventional artificial neural network for the diagnosis of diabetes
A computer software for simulating single-compartmental model of neurons
Vibrational resonance in a heterogeneous scale free network of neurons

Koleksiyon: Scopus İndeksli Yayı ... ✕Koleksiyon: Araştırma Çıktıları ... ✕Koleksiyon: Makale Koleksiyonu ( ... ✕

- Mühendislik Fakültesi 60
- Elektrik - Elektronik Mühendisliği Bölümü 60
- Fakülteler 60
- Araştırma Çıktıları | WoS | Scopus | TR-Dizin | PubMed | SOBİAD 60
- Scopus İndeksli Yayınlar Koleksiyonu 60
- WoS İndeksli Yayınlar Koleksiyonu 60
- Biyomedikal Mühendisliği Bölümü 21
- Makale Koleksiyonu (Biyomedikal Mühendisliği Bölümü) 21
- Bilgisayar Mühendisliği Bölümü 7
- Makale Koleksiyonu (Bilgisayar Mühendisliği Bölümü) 7
- Makine Mühendisliği Bölümü 1
- Tıp Fakültesi 1
- Bildiri Koleksiyonu (Elektrik - Elektronik Mühendisliği Bölümü) 1
- Cerrahi Bilimler Bölümü 1
- Makale Koleksiyonu (Cerrahi Bilimler Bölümü) 1
- Makale Koleksiyonu (Makine Mühendisliği Bölümü) 1
- TR-Dizin İndeksli Yayınlar Koleksiyonu 1 Daha fazlası Daha az

- Özer, Mahmut 50
- Uzuntarla, Muhammet 18
- Yılmaz, Ergin 14
- Perc, Matjaž 13
- Erkaymaz, Okan 8
- Baysal, Veli 6
- Saraç, Zehra 5
- İşler, Yalçın 5
- Graham, Lyle J. 4
- Narin, Ali 4
- Uzun, Rukiye 4
- Çalım, Ali 4
- Erdem, Rıza 3
- Hekim, Mahmut 3
- Orhan, Umut 3
- Torres, Joaquin J. 3
- Ağaoğlu, Şükrüye Nihal 2
- Barreto, Ernest 2
- Hacıoğlu, Rıfat 2
- Hövel, Philipp 2 Daha fazlası Daha az

- Ion channel 6
- Ion channel noise 6
- Excitable membranes 4
- Heart rate variability 4
- Small-world network 4
- Artificial neural network 3
- Autapse 3
- EEG signals 3
- Path probability method 3
- Scale-free network 3
- Stochastic resonance 3
- Synchronization 3
- Thermodynamic model 3
- (In)Activation gate 2
- Channel noise 2
- Congestive heart failure 2
- Genetic algorithm 2
- Image quality 2
- Multilayer perceptron neural network (MLPNN) 2
- Neuronal dynamics 2 Daha fazlası Daha az

- Elsevier Ltd 6
- Elsevier 4
- Elsevier B.V. 4
- American Physical Society 3
- Springer Netherlands 2
- Springer Verlag 2
- Elsevier Inc. 1
- GAZI UNIV, FAC ENGINEERING ARCHITECTURE 1
- Gazi University Eti Mahallesi 1
- Institute of Physics Publishing 1
- Istanbul University 1
- Nature Publishing Group 1
- SPRINGER 1
- Slovak Academy of Sciences - Inst. Measurement Science 1
- Springer International Publishing 1 Daha fazlası Daha az

- Physica A: Statistical Mechanics and its Applications 8
- Physics Letters, Section A: General, Atomic and Solid State Physics 8
- NeuroReport 6
- Chaos, Solitons and Fractals 5
- EPL 2
- European Physical Journal B 2
- Expert Systems with Applications 2
- Physical Review E 2
- Physical Review E - Statistical, Nonlinear, and Soft Matter Physics 2
- Turkish Journal of Electrical Engineering and Computer Sciences 2
- Applied Mathematics and Computation 1
- Communications in Nonlinear Science and Numerical Simulation 1
- Computer Methods and Programs in Biomedicine 1
- Computers in Biology and Medicine 1
- Gazi University Journal of Science 1
- Iranian Journal of Science and Technology - Transactions of Electrical Engineering 1
- Iranian Journal of Science and Technology, Transaction B: Engineering 1
- Istanbul University - Journal of Electrical and Electronics Engineering 1
- JOURNAL OF THE FACULTY OF ENGINEERING AND ARCHITECTURE OF GAZI UNIVERSITY 1
- Journal of Medical Systems 1 Daha fazlası Daha az

Yılmaz, Ergin | Özer, Mahmut | Baysal, Veli | Perc, Matjaž

Article | 2016 | Scientific Reports6

We study the effects of electrical and chemical autapse on the temporal coherence or firing regularity of single stochastic Hodgkin-Huxley neurons and scale-free neuronal networks. Also, we study the effects of chemical autapse on the occurrence of spatial synchronization in scale-free neuronal networks. Irrespective of the type of autapse, we observe autaptic time delay induced multiple coherence resonance for appropriately tuned autaptic conductance levels in single neurons. More precisely, we show that in the presence of an electrical autapse, there is an optimal intensity of channel noise inducing the multiple coherence resonanc . . .e, whereas in the presence of chemical autapse the occurrence of multiple coherence resonance is less sensitive to the channel noise intensity. At the network level, we find autaptic time delay induced multiple coherence resonance and synchronization transitions, occurring at approximately the same delay lengths. We show that these two phenomena can arise only at a specific range of the coupling strength, and that they can be observed independently of the average degree of the network. © The Author(s) 2016 Daha fazlası Daha az

Özer, Mahmut

Article | 2004 | NeuroReport15 ( 9 ) , pp.1451 - 1455

We previously formulated dynamics of ion channel gates by the path probability method. In this study, we apply that theoretical approach to derive the activation rate kinetics of T-type calcium channel in thalamic relay neurons. We derive explicit expressions of the forward and backward rate constants and show that the proposed rate constants accurately capture form of the empirical time constant, and that they also provide its saturation to a constant value at depolarized membrane potentials. We also compare our derivations with linear and nonlinear thermodynamic models of rate kinetics obtained from the same calcium channel, and s . . .how that it is possible to capture saturation of the time constant for the depolarized membrane potentials by the only proposed rate constants. © 2004 Lippincott Williams & Wilkins Daha fazlası Daha az

Özer, Mahmut | Graham, Lyle J. | Erkaymaz, Okan | Uzuntarla, Muhammet

Article | 2007 | NeuroReport18 ( 13 ) , pp.1371 - 1374

Cortical neurons in-vivo operate in a continuum of overall conductance states, depending on the average level of background synaptic input throughout the dendritic tree. We compare how variability, or fluctuations, in this input affects the statistics of the resulting 'spontaneous' or 'background' firing activity, between two extremes of the mean input corresponding to a low-conductance (LC) and a high-conductance (HC) state. In the HC state, we show that both firing rate and regularity increase with increasing variability. In the LC state, firing rate also increases with input variability, but in contrast to the HC state, firing re . . .gularity first decreases and then increases with an increase in the variability. At high levels of input variability, firing regularity in both states converge to similar values. © 2007 Lippincott Williams & Wilkins, Inc Daha fazlası Daha az

Yılmaz, Ergin | Baysal, Veli | Perc, Matjaž | Özer, Mahmut

Article | 2016 | Science China Technological Sciences59 ( 3 ) , pp.364 - 370

An autapse is an unusual synapse that occurs between the axon and the soma of the same neuron. Mathematically, it can be described as a self-delayed feedback loop that is defined by a specific time-delay and the so-called autaptic coupling strength. Recently, the role and function of autapses within the nervous system has been studied extensively. Here, we extend the scope of theoretical research by investigating the effects of an autapse on the transmission of a weak localized pacemaker activity in a scale-free neuronal network. Our results reveal that by mediating the spiking activity of the pacemaker neuron, an autapse increases . . .the propagation of its rhythm across the whole network, if only the autaptic time delay and the autaptic coupling strength are properly adjusted. We show that the autapse-induced enhancement of the transmission of pacemaker activity occurs only when the autaptic time delay is close to an integer multiple of the intrinsic oscillation time of the neurons that form the network. In particular, we demonstrate the emergence of multiple resonances involving the weak signal, the intrinsic oscillations, and the time scale that is dictated by the autapse. Interestingly, we also show that the enhancement of the pacemaker rhythm across the network is the strongest if the degree of the pacemaker neuron is lowest. This is because the dissipation of the localized rhythm is contained to the few directly linked neurons, and only afterwards, through the secondary neurons, it propagates further. If the pacemaker neuron has a high degree, then its rhythm is simply too weak to excite all the neighboring neurons, and propagation therefore fails. © 2016, Science China Press and Springer-Verlag Berlin Heidelberg Daha fazlası Daha az

Yılmaz, Ergin | Baysal, Veli | Özer, Mahmut

Article | 2015 | Physics Letters, Section A: General, Atomic and Solid State Physics379 ( 26-27 ) , pp.1594 - 1599

We investigate the effects of time-periodic coupling strength on the temporal coherence or firing regularity of a scale-free network consisting of stochastic Hodgkin-Huxley (H-H) neurons. The temporal coherence exhibits a resonance-like behavior depending on the cell size or the channel noise intensity. The best temporal coherence requires an optimal channel noise intensity, and this coherence can be significantly increased by time-periodic coupling strength when its frequency matches the integer multiples of the intrinsic subthreshold oscillation frequency of H-H neuron. Particularly, we find the multiple-coherence resonance depend . . .ing on frequency of time-periodic coupling strength at the optimal noise intensity. We also obtain a resonance-like dependence of temporal coherence on the amplitude of time-periodic coupling strength. Additionally, we investigate the effects of average degree on the temporal coherence and find that the temporal coherence exhibits a resonance-like behavior with respect to the network average degree, indicating that the best regularity requires an optimal average degree. © 2015 Elsevier B.V. All rights reserved Daha fazlası Daha az

Onur, Tuğba Özge | Carlson, Johan E | Svanström, Erika | Hacıoğlu, Rıfat

Article | 2019 | Iranian Journal of Science and Technology - Transactions of Electrical Engineering43 ( 3 ) , pp.405 - 413

This paper demonstrates how flexural wave propagation in a thin plate can be modeled by estimating the combined effect of the excitation source signal and the impulse response of the ultrasonic sensor. The wave propagation in the plate is modeled using the wave equation for the flexural wave mode. A theoretical model for flexural wave propagation in thin plates has been derived, and it has been compared with measurements excited by tapping gently on the surface. The combined effects of the excitation source signal and the impulse response of the low-cost piezoelectric sensor are modeled using finite-impulse response and/or infinite- . . .impulse response filters. Thereafter, the performances of the selected filters are compared on estimating the wave propagation in a thin quartz glass plate. Results indicate that the most accurate estimation of wave propagation has been obtained using a linear phase filter which attributes all dispersions to the flexural wave. © 2018, Shiraz University Daha fazlası Daha az

Onur, Tuğba Özge | Hacıoğlu, Rıfat

Article | 2017 | Turkish Journal of Electrical Engineering and Computer Sciences25 ( 2 ) , pp.939 - 949

We investigated adaptive algorithms for a Hammerstein block structure in which a static nonlinear block and dynamic linear block are cascaded. The approach considered here is to use generalized orthonormal basis functions in a Hammerstein block structure by using xed pole lter banks. We applied the normalized least mean square approach to the developed adaptive algorithm in order to acquire Hammerstein block structure parameters. Performance comparison of the proposed approach was investigated considering convergence speed and parametric complexity for acoustic echo cancellation application. The results indicated that in the develop . . .ed algorithm along with appropriate selection of xed poles, the algorithm convergences faster and less parametric complexity is provided when compared to direct adaptive Hammerstein algorithms with IIR and FIR linear blocks. We investigated adaptive algorithms for a Hammerstein block structure in which a static nonlinear block and dynamic linear block are cascaded. The approach considered here is to use generalized orthonormal basis functions in a Hammerstein block structure by using xed pole lter banks. We applied the normalized least mean square approach to the developed adaptive algorithm in order to acquire Hammerstein block structure parameters. Performance comparison of the proposed approach was investigated considering convergence speed and parametric complexity for acoustic echo cancellation application. The results indicated that in the developed algorithm along with appropriate selection of xed poles, the algorithm convergences faster and less parametric complexity is provided when compared to direct adaptive Hammerstein algorithms with IIR and FIR linear blocks Daha fazlası Daha az

Erkaymaz, Okan | Özer, Mahmut | Perc, Matjaž

Article | 2017 | Applied Mathematics and Computation311 , pp.22 - 28

We investigate the performance of two different small-world feedforward neural networks for the diagnosis of diabetes. We use the Pima Indians Diabetic Dataset as input. We have previously shown than the Watts–Strogatz small-world feedforward neural network delivers a better classification performance than conventional feedforward neural networks. Here, we compare this performance further with the one delivered by the Newman–Watts small-world feedforward neural network, and we show that the latter is better still. Moreover, we show that Newman–Watts small-world feedforward neural networks yield the highest output correlation as well . . . as the best output error parameters. © 2017 Elsevier Inc Daha fazlası Daha az

Erkaymaz, Hande | Özer, Mahmut | Orak, İlhami Muharrem

Article | 2015 | Chaos, Solitons and Fractals77 , pp.225 - 229

The electrooculogram signals are very important at extracting information about detection of directional eye movements. Therefore, in this study, we propose a new intelligent detection model involving an artificial neural network for the eye movements based on the electrooculogram signals. In addition to conventional eye movements, our model also involves the detection of tic and blinking of an eye. We extract only two features from the electrooculogram signals, and use them as inputs for a feed-forwarded artificial neural network. We develop a new approach to compute these two features, which we call it as a movement range. The res . . .ults suggest that the proposed model have a potential to become a new tool to determine the directional eye movements accurately. © 2015 Elsevier Ltd. All rights reserved Daha fazlası Daha az

Erkaymaz, Okan | Özer, Mahmut

Article | 2016 | Chaos, Solitons and Fractals83 , pp.178 - 185

Artificial intelligent systems have been widely used for diagnosis of diseases. Due to their importance, new approaches are attempted consistently to increase the performance of these systems. In this study, we introduce a new approach for diagnosis of diabetes based on the Small-World Feed Forward Artificial Neural Network (SW- FFANN). We construct the small-world network by following the Watts-Strogatz approach, and use this architecture for classifying the diabetes, and compare its performance with that of the regular or the conventional FFANN. We show that the classification performance of the SW-FFANN is better than that of the . . . conventional FFANN. The SW-FFANN approach also results in both the highest output correlation and the best output error parameters. We also perform the accuracy analysis and show that SW-FFANN approach exhibits the highest classifier performance. © 2015 Elsevier Ltd. All rights reserved Daha fazlası Daha az

Özer, Mahmut | İşler, Yalçın | Özer, Halil

Article | 2004 | Computer Methods and Programs in Biomedicine75 ( 1 ) , pp.51 - 57

In this paper, a new computer software package, Yalzer, is introduced for simulating single-compartmental model of neurons. Passive or excitable membranes with voltage-gated ion channels can be modeled, and current clamp and voltage clamp experiments can be simulated. In the Yalzer, first-order differential equations used to define the dynamics of the gate variables and the membrane potential are solved by two separate integration methods with variable time steps: forward Euler and exponential Euler methods. Outputs of the simulation are shown on a spreadsheet template for allowing flexible data manipulation and can be graphically d . . .isplayed. The user can define the model in detail, and examine the excitability of the model and the dynamics of voltage-gated ion channels. The software package addresses to ones who want to run simple simulations of neurons without need to any programming language skills or expensive software. It can also be used for educational purposes. © 2003 Elsevier Ireland Ltd. All rights reserved Daha fazlası Daha az

Uzuntarla, Muhammet | Yılmaz, Ergin | Wagemakers, Alexandre | Özer, Mahmut

Article | 2015 | Communications in Nonlinear Science and Numerical Simulation22 ( 01.Mar ) , pp.367 - 374

Vibrational resonance (VR) is a phenomenon whereby the response of some dynamical systems to a weak low-frequency signal can be maximized with the assistance of an optimal intensity of another high-frequency signal. In this paper, we study the VR in a heterogeneous neural system having a complex network topology. We consider a scale-free network of neurons where the heterogeneity is in the intrinsic excitability of the individual neurons. It is shown that emergence of VR in heterogeneous neuron population requires less energy than a homogeneous population. We also find that electrical coupling strength among neurons plays a key role . . . in determining the weak signal processing capacity of the heterogeneous population. Lastly, we investigate the influence of interneuronal link density on the VR and demonstrate that the energy needed to obtain the resonance grows with the increase in average degree. © 2014 Elsevier B.V Daha fazlası Daha az

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