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Araştırmacılar

Sorption of acid dyes from aqueous solution by using non-ground ash and slag
Early prediction of paroxysmal atrial fibrillation based on short-term heart rate variability
Effects of electromagnetic induction on vibrational resonance in single neurons and neuronal networks
Firing dynamics in hybrid coupled populations of bistable neurons
A theoretical description of inverse stochastic resonance in nature
Comment on “Miocene to Quaternary tectonostratigraphic evolution of the middle section of the Burdur-Fethiye Shear Zone, south-western Turkey: Implications for the wide inter-plate shear zones. Tectonophysics 690, 336–354”
Autaptic pacemaker mediated propagation of weak rhythmic activity across small-world neuronal networks
Effects of autapse and ion channel block on the collective firing activity of Newman–Watts small-world neuronal networks
Vibrational resonance in a scale-free network with different coupling schemes

- Mühendislik Fakültesi 9
- Fakülteler 9
- Araştırma Çıktıları | WoS | Scopus | TR-Dizin | PubMed | SOBİAD 9
- Scopus İndeksli Yayınlar Koleksiyonu 9
- WoS İndeksli Yayınlar Koleksiyonu 8
- Biyomedikal Mühendisliği Bölümü 6
- Makale Koleksiyonu (Biyomedikal Mühendisliği Bölümü) 6
- Elektrik - Elektronik Mühendisliği Bölümü 4
- Makale Koleksiyonu (Elektrik - Elektronik Mühendisliği Bölümü) 4
- Bildiri Koleksiyonu (Biyomedikal Mühendisliği Bölümü) 1
- Bildiri Koleksiyonu (Elektrik - Elektronik Mühendisliği Bölümü) 1
- Çevre Mühendisliği Bölümü 1
- Diğer Yayınlar Koleksiyonu (Jeoloji Mühendisliği Bölümü) 1
- Makale Koleksiyonu (Çevre Mühendisliği Bölümü) 1
- Jeoloji Mühendisliği Bölümü 1 Daha fazlası Daha az

- Özer, Mahmut 4
- Uzuntarla, Muhammet 3
- Yılmaz, Ergin 3
- Baysal, Veli 2
- Perc, Matjaž 2
- Alçiçek, M. Cihat 1
- Ağaoğlu, Şükrüye Nihal 1
- Genç, Ayten 1
- Göktaş, Fikret 1
- Hakyemez, H.Yavuz 1
- Hövel, Philipp 1
- Marro J. 1
- Murray A.M. 1
- Narin, Ali 1
- Oğuz, Aşkın 1
- Saraç, Gerçek 1
- Tesakov, Alison S. 1
- Torres, Joaquín J. 1
- Uzun, Rukiye 1
- van den Hoek Ostende L.W. 1 Daha fazlası Daha az

- Autapse 2
- Vibrational resonance 2
- Acid dyes 1
- Bistability 1
- Channel noise 1
- Chemical synapses 1
- Early prediction 1
- Electromagnetic induction 1
- Furnace bottom ash 1
- Gap junctions 1
- Genetic algorithm 1
- Granulated blast furnace slag 1
- Heart rate variability 1
- Hodgkin–Huxley neuron 1
- Hybrid networks 1
- Inverse stochastic resonance 1
- Metastable dynamics 1
- Multi-coherence resonance 1
- Neural dynamics 1
- Neuronal dynamics 1 Daha fazlası Daha az

Genç, Ayten | Oğuz, Aşkın

Article | 2010 | Desalination264 ( 01.Feb ) , pp.78 - 83

The sorption of two acid dyes (Acid Yellow 99 and Acid Red 183) into locally available industrial waste materials, namely, Granulated Blast Furnace Slag (GBFS) and Furnace Bottom Ash (FBA), has been investigated by performing batch equilibrium experiments with pH, ionic conductivity, initial dye concentration and temperature as variables. The kinetic sorption data indicated that the sorption capacity of GBFS for these dyes was almost zero. On the other hand, the color removal efficiency for FBA could reach 50% depending on the initial dye concentration. It was also found that the kinetics of sorption of Acid Yellow 99 and Acid Red 1 . . .83 onto the surface of FBA at different operating conditions were best described by the Elovich kinetic model. In addition, the adsorption equilibrium data were analyzed using various adsorption isotherm models and the results have shown that the sorption behaviors of the studied dyes could be best described by the Langmuir model. © 2010 Elsevier B.V Daha fazlası Daha az

Narin, Ali | İşler, Yalçın | Özer, Mahmut | Perc, Matjaž

Article | 2018 | Physica A: Statistical Mechanics and its Applications509 , pp.56 - 65

Atrial fibrillation (AF) is the most common arrhythmia type and its early stage is paroxysmal atrial fibrillation (PAF). PAF affects negatively the quality of life by causing dyspnea, chest pain, feeling of excessive fatigue, and dizziness. In this study, our aim is to predict the onset of paroxysmal atrial fibrillation (PAF) events so that patients can take precautions to prevent PAF events. We use an open data from Physionet, Atrial Fibrillation Prediction Database. We construct our approach based on the heart rate variability (HRV) analysis. Short-term HRV analysis requires 5-minute data so that each dataset was divided into 5-mi . . .nute data segments. HRV features for each segment are calculated from time-domain measures and frequency-domain measures using power spectral density estimations of fast Fourier transform, Lomb–Scargle, and wavelet transform methods. Different combinations of these HRV features are selected by Genetic Algorithm and then applied to k-nearest neighbors classification algorithm. We compute the classifier performances by the 10-fold cross-validation method. The proposed approach results in 92% sensitivity, 88% specificity and 90% accuracy in the 2.5–7.5 min time interval priors to PAF event. The proposed method results in better classification performance than the similar studies in literature. Comparing the existing studies, we propose that our approach provide better tool to predict PAF events. © 2018 Elsevier B.V Daha fazlası Daha az

Baysal, Veli | Yılmaz, Ergin

Article | 2020 | Physica A: Statistical Mechanics and its Applications537 , pp.56 - 65

In this paper, Vibrational Resonance (VR), in which the response of some dynamical systems to a weak, low frequency signal can be enhanced by the optimal amplitude of high frequency signal, is investigated under the effects of electromagnetic induction in both single neurons and small-world networks. We find that the occurrence of VR in single neurons requires less energy in the presence of electromagnetic induction, although the resonant peak of the response reduces. Besides, VR can be obtained in small-world networks both with and without electromagnetic induction. In small-world neuronal networks, the highest resonance peak of VR . . . enhances with an increase in the probability of adding link in case of without electromagnetic induction. On the other hand, with the increasing of the probability of adding link, VR disappears in the presence of relatively strong electromagnetic induction, while it enhances in the presence of relatively weak electromagnetic induction. © 2019 Elsevier B.V Daha fazlası Daha az

Uzuntarla, Muhammet

Article | 2019 | Neurocomputing367 , pp.328 - 336

We study the firing behavior of bistable neurons that are coupled by both electrical and chemical synapses, constituting a hybrid coupled population. We use stochastic Hodgkin–Huxley model neurons for the dynamics of individual bistable units within the population and the connectivity is implemented with a scale-free network topology which is a widely used network paradigm in theoretical studies of neural circuits. By analyzing the electrical activity of both whole population and individual neurons, it is shown that population mean firing rate exhibits a non-monotonic behavior in the space of electrical and chemical coupling strengt . . .hs. We identify dynamical mechanisms that shape such non-monotonic spiking behavior and show that different types of population spiking patterns can emerge by fine-tuning the coupling strengths of electrical and chemical synapses. Furthermore, we map the transitions between observed dynamical states in the parameter space of interest depending on the level of individual neuron bistability, existence probability of a synapse type and intrinsic ion channel noise. © 2019 Elsevier B.V Daha fazlası Daha az

Torres, Joaquín J. | Uzuntarla, Muhammet | Marro J.

Article | 2020 | Communications in Nonlinear Science and Numerical Simulation80 , pp.328 - 336

The inverse stochastic resonance (ISR) phenomenon consists of an unexpected depression in the response of a system under external noise, e.g., as observed in the mean firing rate in some pacemaker neurons subject to moderate values of noise. A possible cause for such unexpected reaction is the occurrence of a bistable regime controlling these neurons dynamics. We here explore theoretically the emergence of ISR in a general bistable model system, and thus determine the specific conditions the potential function driving the dynamics must accomplish. We conclude that such an intriguing, and apparently widely observed, phenomenon ensues . . . in the case of an asymmetric potential function when the high activity minimum state of the system is metastable having a larger basin of attraction than the low activity state which is the global minimum of the system. We then discuss on the relevance of such a picture to understand the ISR features and to predict its appearance in nature. In addition, we report on existence of another intriguing, non-standard stochastic resonance in our model even in the absence of any weak signal input. Depending on the shape of the potential function, this new phenomenon shows up together with ISR precisely within the theoretical framework we present in this paper. © 2019 Elsevier B.V Daha fazlası Daha az

Alçiçek, M. Cihat | van den Hoek Ostende L.W. | Saraç, Gerçek | Tesakov, Alison S. | Murray A.M. | Hakyemez, H.Yavuz | Göktaş, Fikret

Editorial | 2018 | Tectonophysics722 , pp.595 - 600

[No abstract available]

Yılmaz, Ergin | Baysal, Veli | Özer, Mahmut | Perc, Matjaž

Article | 2016 | Physica A: Statistical Mechanics and its Applications444 , pp.538 - 546

We study the effects of an autapse, which is mathematically described as a self-feedback loop, on the propagation of weak, localized pacemaker activity across a Newman-Watts small-world network consisting of stochastic Hodgkin-Huxley neurons. We consider that only the pacemaker neuron, which is stimulated by a subthreshold periodic signal, has an electrical autapse that is characterized by a coupling strength and a delay time. We focus on the impact of the coupling strength, the network structure, the properties of the weak periodic stimulus, and the properties of the autapse on the transmission of localized pacemaker activity. Obta . . .ined results indicate the existence of optimal channel noise intensity for the propagation of the localized rhythm. Under optimal conditions, the autapse can significantly improve the propagation of pacemaker activity, but only for a specific range of the autaptic coupling strength. Moreover, the autaptic delay time has to be equal to the intrinsic oscillation period of the Hodgkin-Huxley neuron or its integer multiples. We analyze the inter-spike interval histogram and show that the autapse enhances or suppresses the propagation of the localized rhythm by increasing or decreasing the phase locking between the spiking of the pacemaker neuron and the weak periodic signal. In particular, when the autaptic delay time is equal to the intrinsic period of oscillations an optimal phase locking takes place, resulting in a dominant time scale of the spiking activity. We also investigate the effects of the network structure and the coupling strength on the propagation of pacemaker activity. We find that there exist an optimal coupling strength and an optimal network structure that together warrant an optimal propagation of the localized rhythm. © 2015 Elsevier B.V. All rights reserved Daha fazlası Daha az

Uzun, Rukiye | Yılmaz, Ergin | Özer, Mahmut

Article | 2017 | Physica A: Statistical Mechanics and its Applications486 , pp.386 - 396

An autapse is a special kind of synapse established between the axon and dendrites of the same neuron. In the present study, we have investigated the cooperative effects of autapse and ion channel block on the collective firing regularity of Newman–Watts small-world networks of stochastic Hodgkin–Huxley neurons. We obtain autaptic time delay induced multi-coherence resonance (MCR) phenomenon in the absence of ion channel block. When the ion channel block is considered, we find that this autaptic delay induced MCR phenomenon enhances with the increasing of potassium channel block, whereas it weakens with the increasing of sodium chan . . .nel block at weak and intermediate autaptic conductance regimes. However, at strong autaptic conductance regime neither sodium nor potassium channel block have a significant effect on the collective firing regularity of the network. Besides, we investigate the effects of the coupling strength, the network randomness and the cell size on the regularity. We obtain an optimal coupling strength value and an optimal cell size leading to a more prominent MCR effect. We also show that the MCR phenomenon increases with the increasing of network randomness in potassium channel block, but it needs to a minimum network randomness for its appearing in case of sodium channel block. © 2017 Elsevier B.V Daha fazlası Daha az

Ağaoğlu, Şükrüye Nihal | Çalım, Ali | Hövel, Philipp | Özer, Mahmut | Uzuntarla, Muhammet

Article | 2019 | Neurocomputing325 , pp.59 - 66

We investigate the phenomenon of vibrational resonance (VR) in neural populations, whereby weak low-frequency signals below the excitability threshold can be detected with the help of additional high-frequency driving. The considered dynamical elements consist of excitable FitzHugh–Nagumo neurons connected by electrical gap junctions and chemical synapses. The VR performance of these populations is studied in unweighted and weighted scale-free networks. We find that although the characteristic network features – coupling strength and average degree – do not dramatically affect the signal detection quality in unweighted electrically . . .coupled neural populations, they have a strong influence on the required energy level of the high-frequency driving force. On the other hand, we observe that unweighted chemically coupled populations exhibit the opposite behavior, and the VR performance is significantly affected by these network features whereas the required energy remains on a comparable level. Furthermore, we show that the observed VR performance for unweighted networks can be either enhanced or worsened by degree-dependent coupling weights depending on the amount of heterogeneity. © 2018 Elsevier B.V Daha fazlası Daha az

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